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Crystal structure of RIAM in an autoinhibited configuration.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TCA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 0.1 M Magnesium acetate, 6% PEG 3350
Crystal Properties Matthews coefficient Solvent content 3.09 60.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.495 α = 90 b = 83.956 β = 91.08 c = 45.2 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2017-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE A1 1 CHESS A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 98 32.05 3.4 19178
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 97.7 2.04 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3TCA 2.4 50 18730 921 98.01 0.21277 0.21133 0.2144 0.23985 0.2433 RANDOM 78.815
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.09 -0.47 -4.76 -4.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.266 r_dihedral_angle_4_deg 16.847 r_dihedral_angle_3_deg 14.934 r_long_range_B_refined 7.667 r_dihedral_angle_1_deg 5.955 r_mcangle_it 3.436 r_scbond_it 2.078 r_mcbond_it 2.021 r_angle_refined_deg 1.073 r_chiral_restr 0.065
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.266 r_dihedral_angle_4_deg 16.847 r_dihedral_angle_3_deg 14.934 r_long_range_B_refined 7.667 r_dihedral_angle_1_deg 5.955 r_mcangle_it 3.436 r_scbond_it 2.078 r_mcbond_it 2.021 r_angle_refined_deg 1.073 r_chiral_restr 0.065 r_bond_refined_d 0.007 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2412 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing