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Structure of a N-Me-p-iodo-D-Phe1,N-Me-D-Gln4,Lys10-teixobactin analogue
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 15% PEG 3350, 0.19M sodium sulphate
Crystal Properties Matthews coefficient Solvent content 1.99 38.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.478 α = 90 b = 69.37 β = 90 c = 115.422 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-06-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 2.06633 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.011 39.21 85.3 8.8 21.6 18708
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.011 2.076 13.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 39.21 17797 910 93.36 0.21293 0.21123 0.2119 0.24577 0.2459 RANDOM 20.803
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.27 0.39 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.024 r_dihedral_angle_1_deg 8.416 r_long_range_B_other 8.215 r_long_range_B_refined 8.212 r_scangle_other 5.412 r_scbond_other 3.734 r_scbond_it 3.708 r_mcangle_it 2.818 r_mcangle_other 2.818 r_angle_refined_deg 1.913
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.024 r_dihedral_angle_1_deg 8.416 r_long_range_B_other 8.215 r_long_range_B_refined 8.212 r_scangle_other 5.412 r_scbond_other 3.734 r_scbond_it 3.708 r_mcangle_it 2.818 r_mcangle_other 2.818 r_angle_refined_deg 1.913 r_mcbond_it 1.741 r_mcbond_other 1.741 r_angle_other_deg 0.543 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2816 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms 160
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHENIX phasing