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Structure of the Orthorhombic (Orthrhmb) Crystal Form of Human Apolipoprotein C1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 298 16% MPD - 18% MPD
Crystal Properties Matthews coefficient Solvent content 1.76 30.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.459 α = 90 b = 53.698 β = 90 c = 71.2 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 AREA DETECTOR SDMS 1992-08-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 42 91.8 0.169 0.169 0.18 0.08 0.997 5.5 7.1 2687
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.18 56.3 0.491 0.491 0.619 0.369 0.733 1.1 1.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 42 2538 122 92.27 0.22702 0.22389 0.2343 0.2827 0.2858 RANDOM 69.741
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.97 2.12 -6.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.989 r_dihedral_angle_3_deg 19.091 r_long_range_B_refined 18.157 r_long_range_B_other 18.126 r_scangle_other 15.137 r_scbond_it 9.125 r_scbond_other 9.115 r_dihedral_angle_4_deg 8.724 r_mcangle_it 8.538 r_mcangle_other 8.532
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.989 r_dihedral_angle_3_deg 19.091 r_long_range_B_refined 18.157 r_long_range_B_other 18.126 r_scangle_other 15.137 r_scbond_it 9.125 r_scbond_other 9.115 r_dihedral_angle_4_deg 8.724 r_mcangle_it 8.538 r_mcangle_other 8.532 r_dihedral_angle_1_deg 5.875 r_mcbond_other 5.539 r_mcbond_it 5.538 r_angle_refined_deg 1.546 r_angle_other_deg 0.791 r_chiral_restr 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 843 Nucleic Acid Atoms Solvent Atoms 14 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction Aimless data scaling PHASER phasing