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Crystal Structure of Human Mitochondrial Trifunctional Protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1AFW 1AFW, 2WTB, experimental model PDB 2WTB 1AFW, 2WTB,
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 7 292 0.1 M Heps pH 7.0, 12% pEG3350 and 0.2 M MgCl2
Crystal Properties Matthews coefficient Solvent content 2.87 57.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 136.536 α = 90 b = 237.938 β = 105.61 c = 141.319 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2010-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-BM 1.0 APS 17-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.6 89.574 99.9 0.105 0.132 0.057 13.2 5.3 100350 100350
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.6 3.79 100 0.728 0.728 0.91 0.394 1.1 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1AFW, 2WTB, 3.6 89.56 99045 4955 98.7 0.244 0.244 0.2436 0.289 0.2884 RANDOM 122.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -24.41 -7.74 11.29 13.12
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 22.95 c_dihedral_angle_d 22.9 c_scbond_it 17 c_mcangle_it 13.62 c_mcbond_it 8.58 c_improper_angle_d 0.98 c_angle_deg 0.8 c_bond_d 0.003 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 22.95 c_dihedral_angle_d 22.9 c_scbond_it 17 c_mcangle_it 13.62 c_mcbond_it 8.58 c_improper_angle_d 0.98 c_angle_deg 0.8 c_bond_d 0.003 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 52059 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose CNS refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction PHASER phasing