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Crystal structure of Haemophilus influenzae OppA complex with KKK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 295 0.1M sodium acetate pH 4.6, 2.2M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 1.98 37.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.8 α = 90 b = 92.332 β = 90 c = 108.362 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2018-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-D 1.0782 APS 21-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 46.73 97.9 0.055 16.5 9.1 48105
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.78 93.8 0.525 2.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 46.73 45707 2341 97.63 0.1776 0.1753 0.1895 0.2212 0.2329 RANDOM 40.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.71 -2.02 -4.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.4 r_dihedral_angle_3_deg 14.233 r_dihedral_angle_4_deg 11.559 r_dihedral_angle_1_deg 6.504 r_angle_refined_deg 1.317 r_angle_other_deg 0.933 r_chiral_restr 0.065 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.4 r_dihedral_angle_3_deg 14.233 r_dihedral_angle_4_deg 11.559 r_dihedral_angle_1_deg 6.504 r_angle_refined_deg 1.317 r_angle_other_deg 0.933 r_chiral_restr 0.065 r_bond_refined_d 0.01 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4133 Nucleic Acid Atoms Solvent Atoms 249 Heterogen Atoms 10
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction BALBES phasing ARP/wARP model building