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Undecorated GDP microtubule
Refinement RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.573 r_dihedral_angle_3_deg 15.896 r_dihedral_angle_4_deg 13.058 r_dihedral_angle_1_deg 11.004 r_long_range_B_refined 4.911 r_long_range_B_other 4.911 r_mcangle_it 2.059 r_mcangle_other 2.059 r_scangle_other 1.64 r_angle_refined_deg 1.383
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.573 r_dihedral_angle_3_deg 15.896 r_dihedral_angle_4_deg 13.058 r_dihedral_angle_1_deg 11.004 r_long_range_B_refined 4.911 r_long_range_B_other 4.911 r_mcangle_it 2.059 r_mcangle_other 2.059 r_scangle_other 1.64 r_angle_refined_deg 1.383 r_mcbond_it 1.104 r_mcbond_other 1.104 r_angle_other_deg 0.951 r_scbond_it 0.846 r_scbond_other 0.846 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Sample Dynamic microtubule in GDP state
Specimen Preparation Sample Aggregation State HELICAL ARRAY Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details Blot for 4 seconds before plunging.
3D Reconstruction Reconstruction Method HELICAL Number of Particles 48097 Reported Resolution (Å) 3.3 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type HELICAL Axial Symmetry C1 Axial Rise 8.754 Angular Rotation -25.766
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol RIGID BODY FIT Refinement Target Correlation coefficient Overall B Value 150 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 1.4
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1000 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 27500 Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version IMAGE ACQUISITION SerialEM CTF CORRECTION Gctf MODEL FITTING UCSF Chimera INITIAL EULER ASSIGNMENT EMAN FINAL EULER ASSIGNMENT FREALIGN RECONSTRUCTION FREALIGN MODEL REFINEMENT REFMAC
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION