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Integrin alpha-v beta-8 in complex with the Fabs 8B8 and 68
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.821 f_angle_d 1.162 f_chiral_restr 0.066 f_plane_restr 0.008 f_bond_d 0.007
Sample Alpha-v Beta-8 Integrin in complex with the Fabs 68 and 8B8
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK III Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 17442 Reported Resolution (Å) 4.8 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 41
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI POLARA 300 Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version CTF CORRECTION Gctf MODEL FITTING PHENIX INITIAL EULER ASSIGNMENT RELION FINAL EULER ASSIGNMENT FREALIGN 9.11 CLASSIFICATION RELION RECONSTRUCTION FREALIGN 9.11 MODEL REFINEMENT Rosetta MODEL REFINEMENT PHENIX
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION