☰ Navigation Tabs
RSV prefusion F bound to RSD5 Fab
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4MMU 4MMU, 1DFB, 1MCO experimental model PDB 1DFB 4MMU, 1DFB, 1MCO experimental model PDB 1MCO 4MMU, 1DFB, 1MCO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 1.8 M Lithium sulfate, 0.1 M Tris pH 8.0
Crystal Properties Matthews coefficient Solvent content 7.88 84.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 270.32 α = 90 b = 270.32 β = 90 c = 270.32 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2015-03-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.979 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.5 38.23 99.9 0.104 0.117 0.053 0.995 9.7 4.8 41327 126.75
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.5 3.64 100 0.846 0.96 0.448 0.528 4.6 21266
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4MMU, 1DFB, 1MCO 3.501 38.229 1.34 41305 1966 99.93 0.1838 0.1827 0.185 0.205 0.2064 132.1736
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6797 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 93
Software Software Software Name Purpose PHENIX refinement MOSFLM data reduction Aimless data scaling PHASER phasing