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Tribbles (TRIB1) pseudokinase fused to CCAAT-enhancer binding protein (C/EBPalpha) degron
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5CEM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 2.8 M Na Acetate, 0.1 M BIS-TRIS prop 7 pH with 5% sodium citrate
Crystal Properties Matthews coefficient Solvent content 3.57 65.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.809 α = 90 b = 98.809 β = 90 c = 332.705 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD ADSC QUANTUM 315r 2016-02-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX2 0.9537 Australian Synchrotron MX2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 48.7 99.4 19.8 10.4 24777
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.8 2.95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5CEM 2.8 48.7 23461 1222 99.73 0.22254 0.2199 0.2296 0.27679 0.2834 RANDOM 113
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -0.21 -0.41 1.34
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.522 r_dihedral_angle_4_deg 21.916 r_dihedral_angle_3_deg 18.33 r_long_range_B_refined 11.392 r_long_range_B_other 11.392 r_dihedral_angle_1_deg 6.805 r_scangle_other 6.676 r_mcangle_it 5.853 r_mcangle_other 5.853 r_scbond_it 4.115
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.522 r_dihedral_angle_4_deg 21.916 r_dihedral_angle_3_deg 18.33 r_long_range_B_refined 11.392 r_long_range_B_other 11.392 r_dihedral_angle_1_deg 6.805 r_scangle_other 6.676 r_mcangle_it 5.853 r_mcangle_other 5.853 r_scbond_it 4.115 r_scbond_other 4.114 r_mcbond_it 3.774 r_mcbond_other 3.769 r_angle_refined_deg 1.654 r_angle_other_deg 1.338 r_chiral_restr 0.1 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.005 r_gen_planes_other 0.005 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4311 Nucleic Acid Atoms Solvent Atoms 40 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing