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Structure of CysZ, a sulfate permease from Pseudomonas Denitrificans
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 6D79
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 22-30% PEG550MME, 0.1 M Na-Hepes pH 7.0
Crystal Properties Matthews coefficient Solvent content 4.33 71.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 225.13 α = 90 b = 225.13 β = 90 c = 96.62 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-02-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-C 1.000 APS 24-ID-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.4 86 100 0.095 22.4 19.7 37223 171.607658049
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.402 3.523 96.87 2.89 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 6D79 3.40213179468 19.9957631618 1.33018353199 37222 1937 96.9802766994 0.247196502171 0.244775522503 0.2702 0.288702881638 0.3164 195.946588017
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 12.0221750279 f_angle_d 1.0972445113 f_chiral_restr 0.0732529126325 f_bond_d 0.00990000904452 f_plane_restr 0.00726091075046
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11415 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 400
Software Software Software Name Purpose phenix.refine refinement PDB_EXTRACT data extraction XDS data reduction Coot model building PHASER phasing SCALA data scaling