☰ Navigation Tabs
Ternary RsAgo Complex with Guide RNA and Target DNA Containing G-A Non-canonical Pair
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 293 40% MPD, 30 mM magnesium acetate, 50 mM sodium cacodylate pH 5.7
Crystal Properties Matthews coefficient Solvent content 2.44 49.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.045 α = 90 b = 118.253 β = 95.51 c = 117.827 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2014-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9792 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 50 98.1 0.109 0.99 11.1 3.5 55738
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.69 97.8 0.777 0.722 2.3 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.6 41.67 52883 2824 97.59 0.2138 0.2117 0.2128 0.2533 0.2544 RANDOM 51.726
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.17 -0.53 4.82 -2.55
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.083 r_dihedral_angle_4_deg 16.648 r_dihedral_angle_3_deg 16.246 r_dihedral_angle_1_deg 5.617 r_angle_refined_deg 0.972 r_angle_other_deg 0.783 r_chiral_restr 0.056 r_bond_refined_d 0.005 r_bond_other_d 0.003 r_gen_planes_refined 0.003
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.083 r_dihedral_angle_4_deg 16.648 r_dihedral_angle_3_deg 16.246 r_dihedral_angle_1_deg 5.617 r_angle_refined_deg 0.972 r_angle_other_deg 0.783 r_chiral_restr 0.056 r_bond_refined_d 0.005 r_bond_other_d 0.003 r_gen_planes_refined 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11607 Nucleic Acid Atoms 1570 Solvent Atoms 139 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction HKL-2000 data scaling PHASER phasing