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Protein 60 with aldehyde deformylating oxidase activity from Kitasatospora setae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 298 0.075 M TRIS hydrochloride pH 8.5, 1.5 M Ammonium sulfate, 25% v/v Glycerol
Crystal Properties Matthews coefficient Solvent content 2.66 53.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.63 α = 90 b = 79.03 β = 90 c = 124.73 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-01-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.97946 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.03 66.76 99.8 0.059 15.8 6.1 50138
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.03 2.08 100 0.362 4.8 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.03 66.76 47581 2501 99.68 0.19957 0.19773 0.207 0.23395 0.2411 RANDOM 43.396
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.02 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.191 r_dihedral_angle_4_deg 18.474 r_dihedral_angle_3_deg 14.027 r_long_range_B_other 6.749 r_long_range_B_refined 6.748 r_scangle_other 5.448 r_dihedral_angle_1_deg 5.234 r_mcangle_it 3.893 r_mcangle_other 3.893 r_scbond_it 3.654
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.191 r_dihedral_angle_4_deg 18.474 r_dihedral_angle_3_deg 14.027 r_long_range_B_other 6.749 r_long_range_B_refined 6.748 r_scangle_other 5.448 r_dihedral_angle_1_deg 5.234 r_mcangle_it 3.893 r_mcangle_other 3.893 r_scbond_it 3.654 r_scbond_other 3.649 r_mcbond_it 2.845 r_mcbond_other 2.84 r_angle_refined_deg 1.588 r_angle_other_deg 0.884 r_chiral_restr 0.098 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5009 Nucleic Acid Atoms Solvent Atoms 107 Heterogen Atoms 30
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction Aimless data scaling PHASER phasing