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Triclinic lysozyme cryocooled to 100 K with 47% MPD as cryoprotectant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295 Protein: 10 mg/mL in water
Well: 0.3 M NaNO3
Crystal Properties Matthews coefficient Solvent content 1.78 30.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.993 α = 88.27 b = 31.687 β = 71.251 c = 33.989 γ = 68.505
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD OXFORD ONYX CCD 2016-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE Agilent SuperNova 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 13.5 97.1 0.058 0.999 18.8 2.6 6475 6.69282807111
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 0.878 0.671 9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION FREE R-VALUE 2.00006383515 13.1905599404 2.01104711027 6470 304 97.3371445765 0.128806872456 0.125969681724 0.1275 0.192704653407 0.1946 11.1145747538
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 11.134256084 f_angle_d 0.528323589386 f_chiral_restr 0.0347665931927 f_bond_d 0.00207529292998 f_plane_restr 0.00194144302733
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 121 Heterogen Atoms 44
Software Software Software Name Purpose PHENIX refinement SCALA data scaling CrysalisPro data collection PHENIX phasing