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The structure of ligand binding domain of LasR in complex with TP-1 homolog, compound 10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 282.1 80 mM calcium acetate, 40 mM HEPES (pH 7.3), 3 mM dithiothreitol, and 16% polyethylene glycol 4000
Crystal Properties Matthews coefficient Solvent content 2.35 47.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.28 α = 90 b = 84.45 β = 95.71 c = 156.2 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 CCD RAYONIX MX-300 2015-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-F 0.97872 APS 21-ID-F
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 25 97.56 11.7 3.9 102583
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.9 38.86 102615 5401 97.59 0.18172 0.17949 0.1878 0.22412 0.2298 RANDOM 27.844
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.78 0.46 1.54 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.004 r_dihedral_angle_4_deg 18.622 r_dihedral_angle_3_deg 16.836 r_long_range_B_refined 6.897 r_long_range_B_other 6.844 r_dihedral_angle_1_deg 6.067 r_scangle_other 5.469 r_mcangle_other 3.628 r_mcangle_it 3.627 r_scbond_it 3.587
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.004 r_dihedral_angle_4_deg 18.622 r_dihedral_angle_3_deg 16.836 r_long_range_B_refined 6.897 r_long_range_B_other 6.844 r_dihedral_angle_1_deg 6.067 r_scangle_other 5.469 r_mcangle_other 3.628 r_mcangle_it 3.627 r_scbond_it 3.587 r_scbond_other 3.587 r_mcbond_it 2.498 r_mcbond_other 2.495 r_angle_refined_deg 1.818 r_angle_other_deg 1.166 r_chiral_restr 0.116 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10451 Nucleic Acid Atoms Solvent Atoms 663 Heterogen Atoms 240
Software Software Software Name Purpose REFMAC refinement UCSD-system data processing XDS data scaling PHASER phasing