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FT_5 dioxygenase apoenzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 294 Crystal grew from Hampton Research SaltRx screen, condition C3: 2.0M sodium formate, 0.1M sodium acetate-pH 4.6.
Crystal Properties Matthews coefficient Solvent content 2.38 48.25
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.462 α = 90 b = 200.326 β = 110.95 c = 98.308 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2016-10-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 46.2 97.6 0.059 14.4 2.5 67790
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 2.75 89.6 0.301 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 46.19 64352 3438 97.48 0.21493 0.21349 0.2131 0.24114 0.24 RANDOM 72.032
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.93 0.1 1.44 0.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.07 r_dihedral_angle_3_deg 20.739 r_dihedral_angle_4_deg 19.298 r_dihedral_angle_1_deg 7.766 r_long_range_B_refined 6.097 r_long_range_B_other 6.096 r_mcangle_it 3.22 r_mcangle_other 3.22 r_scangle_other 2.621 r_angle_refined_deg 2.267
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.07 r_dihedral_angle_3_deg 20.739 r_dihedral_angle_4_deg 19.298 r_dihedral_angle_1_deg 7.766 r_long_range_B_refined 6.097 r_long_range_B_other 6.096 r_mcangle_it 3.22 r_mcangle_other 3.22 r_scangle_other 2.621 r_angle_refined_deg 2.267 r_mcbond_it 1.874 r_mcbond_other 1.874 r_scbond_it 1.538 r_scbond_other 1.538 r_angle_other_deg 1.241 r_chiral_restr 0.137 r_bond_refined_d 0.019 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17037 Nucleic Acid Atoms Solvent Atoms 173 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing