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Human Stimulator of Interferon Genes
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LOH PDB entry 4LOH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 285 ammonium citrate tribasic, imidazole, PEG5000 MME
Crystal Properties Matthews coefficient Solvent content 2.03 39.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.457 α = 90 b = 111.457 β = 90 c = 35.424 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-03-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL12-2 0.97946 SSRL BL12-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 37 99.9 0.062 0.029 0.999 14.2 5.7 11912 43
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 100 0.657 0.726 0.305 0.759 2.6 5.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 4LOH 2.2 20.01 11264 594 99.66 0.2052 0.20238 0.2109 0.25753 0.2589 RANDOM 52.322
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 0.02 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.116 r_dihedral_angle_4_deg 21.693 r_dihedral_angle_3_deg 19.356 r_long_range_B_other 10.709 r_long_range_B_refined 10.706 r_scangle_other 7.899 r_dihedral_angle_1_deg 7.233 r_mcangle_it 7.196 r_mcangle_other 7.193 r_scbond_it 5.489
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.116 r_dihedral_angle_4_deg 21.693 r_dihedral_angle_3_deg 19.356 r_long_range_B_other 10.709 r_long_range_B_refined 10.706 r_scangle_other 7.899 r_dihedral_angle_1_deg 7.233 r_mcangle_it 7.196 r_mcangle_other 7.193 r_scbond_it 5.489 r_scbond_other 5.488 r_mcbond_it 4.982 r_mcbond_other 4.98 r_angle_refined_deg 1.935 r_angle_other_deg 1.148 r_chiral_restr 0.137 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1424 Nucleic Acid Atoms Solvent Atoms 51 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing