☰ Navigation Tabs
Crystal structure of SpaA-SLH/G109A in complex with 4,6-Pyr-beta-D-ManNAcOMe
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 0.1 M potassium thiocyanate, pH 6.8, 30% PEG2000 MME
Crystal Properties Matthews coefficient Solvent content 2.36 47.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.383 α = 90 b = 36.254 β = 103.74 c = 56.896 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2016-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 50 98.6 0.044 0.049 0.021 23.5 4.3 27852
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.56 84.8 0.155 0.184 0.097 0.962 3.4 1190
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.53 50 26441 1386 99.01 0.1146 0.1126 0.1123 0.1513 0.1513 RANDOM 17.079
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.19 -0.45 0.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.842 r_sphericity_free 32.057 r_dihedral_angle_4_deg 15.808 r_dihedral_angle_3_deg 12.879 r_sphericity_bonded 10.904 r_rigid_bond_restr 5.122 r_dihedral_angle_1_deg 5.06 r_mcangle_it 2.808 r_mcbond_it 2.095 r_angle_refined_deg 2.048
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.842 r_sphericity_free 32.057 r_dihedral_angle_4_deg 15.808 r_dihedral_angle_3_deg 12.879 r_sphericity_bonded 10.904 r_rigid_bond_restr 5.122 r_dihedral_angle_1_deg 5.06 r_mcangle_it 2.808 r_mcbond_it 2.095 r_angle_refined_deg 2.048 r_mcbond_other 1.902 r_angle_other_deg 0.999 r_chiral_restr 0.125 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1256 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 37
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing