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Crystal structure of SpaA-SLH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 289 50 mM calcium chloride dihydrate, 0.1 M Bis-Tris, pH 6.5, 30% v/v PEG550 MME
Crystal Properties Matthews coefficient Solvent content 2.41 48.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.2 α = 90 b = 72.2 β = 90 c = 126.629 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2013-11-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.9795 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 40 99.6 0.072 0.075 0.02 12.5 14.7 30690
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 99.5 0.521 0.539 0.135 0.953 15.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 40 29054 1594 99.63 0.165 0.1623 0.1742 0.2139 0.2229 RANDOM 26.138
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.1 -0.19 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.123 r_sphericity_free 26.642 r_dihedral_angle_4_deg 15.914 r_dihedral_angle_3_deg 14.592 r_sphericity_bonded 6.929 r_dihedral_angle_1_deg 5.718 r_rigid_bond_restr 4.1 r_mcangle_it 2.661 r_mcbond_it 2.228 r_mcbond_other 2.219
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.123 r_sphericity_free 26.642 r_dihedral_angle_4_deg 15.914 r_dihedral_angle_3_deg 14.592 r_sphericity_bonded 6.929 r_dihedral_angle_1_deg 5.718 r_rigid_bond_restr 4.1 r_mcangle_it 2.661 r_mcbond_it 2.228 r_mcbond_other 2.219 r_angle_refined_deg 1.852 r_angle_other_deg 1.323 r_chiral_restr 0.118 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.006 r_gen_planes_other 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2531 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms 12
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction PHASER phasing