☰ Navigation Tabs
Trypanosoma brucei methionyl-tRNA synthetase in complex with inhibitor (Chem 2093)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 298 1.8-2.1 M AMMONIUM SULFATE, 0.2 M
SODIUM CHLORIDE, 0.1 M SODIUM CACODYLATE, PH 6.2-6.8, VAPOR
DIFFUSION, SITTING DROP, TEMPERATURE 298K
Crystal Properties Matthews coefficient Solvent content 3.95 68.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.64 α = 90 b = 106.23 β = 90 c = 208.28 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-06-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.98 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 104.14 100 0.2 6.8 6.6 54250
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.7 104.14 51494 2681 99.9 0.205 0.204 0.2074 0.231 0.2291 RANDOM 55.58
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 8.06 -3.63 -4.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.998 r_dihedral_angle_4_deg 14.902 r_dihedral_angle_3_deg 13.952 r_long_range_B_refined 7.967 r_long_range_B_other 7.967 r_scangle_other 6.197 r_dihedral_angle_1_deg 5.785 r_mcangle_it 4.738 r_mcangle_other 4.738 r_scbond_it 4.189
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.998 r_dihedral_angle_4_deg 14.902 r_dihedral_angle_3_deg 13.952 r_long_range_B_refined 7.967 r_long_range_B_other 7.967 r_scangle_other 6.197 r_dihedral_angle_1_deg 5.785 r_mcangle_it 4.738 r_mcangle_other 4.738 r_scbond_it 4.189 r_scbond_other 4.189 r_angle_other_deg 3.68 r_mcbond_it 2.947 r_mcbond_other 2.947 r_angle_refined_deg 1.376 r_chiral_restr 0.077 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_gen_planes_other 0.005 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8248 Nucleic Acid Atoms Solvent Atoms 137 Heterogen Atoms 44
Software Software Software Name Purpose Aimless data reduction HKL-2000 data scaling PHASER phasing REFMAC refinement