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Crystal structure of an AF10 fragment
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 291 1.5 M ammonium sulfate, 0.1 M Tris
Crystal Properties Matthews coefficient Solvent content 3.47 64.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.701 α = 90 b = 122.558 β = 90 c = 65.404 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2017-01-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.99 44.72 99.3 0.081 0.088 0.032 0.999 16 7.3 28326
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.99 2.04 89.8 1.372 1.5 0.592 0.528 5.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 44.7 26663 1361 99.97 0.2095 0.2082 0.2222 0.2331 0.24 43.911
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.79 -1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.675 r_dihedral_angle_4_deg 17.216 r_dihedral_angle_3_deg 14.211 r_dihedral_angle_1_deg 4.325 r_mcangle_it 2.03 r_angle_refined_deg 1.467 r_mcbond_it 1.29 r_mcbond_other 1.284 r_angle_other_deg 0.987 r_chiral_restr 0.089
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.675 r_dihedral_angle_4_deg 17.216 r_dihedral_angle_3_deg 14.211 r_dihedral_angle_1_deg 4.325 r_mcangle_it 2.03 r_angle_refined_deg 1.467 r_mcbond_it 1.29 r_mcbond_other 1.284 r_angle_other_deg 0.987 r_chiral_restr 0.089 r_bond_refined_d 0.015 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1783 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction SHELXDE phasing