☰ Navigation Tabs
Segment AMMAAA from the low complexity domain of TDP-43, residues 321-326
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model Other IDEAL BETA STRAND
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.3 298 1.3 M ammonium phosphate, 0.1 M sodium acetate pH 6.3
Crystal Properties Matthews coefficient Solvent content 1.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 9.52 α = 90 b = 15.44 β = 90 c = 44.1 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-12-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.9791 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 22.05 96 0.181 0.214 0.995 3.16 3.507 2209 12.836
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 99.3 0.683 0.8 0.692 1.43 3.497
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT IDEAL BETA STRAND 1.2 22.05 2078 108 96.09 0.1989 0.1979 0.2076 0.2184 0.2187 RANDOM 9.425
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.64 0.85 -0.21
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 20.464 r_dihedral_angle_3_deg 13.127 r_dihedral_angle_1_deg 5.912 r_sphericity_bonded 3.626 r_rigid_bond_restr 2.079 r_angle_refined_deg 1.431 r_angle_other_deg 0.629 r_chiral_restr 0.058 r_bond_refined_d 0.012 r_gen_planes_refined 0.003
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 20.464 r_dihedral_angle_3_deg 13.127 r_dihedral_angle_1_deg 5.912 r_sphericity_bonded 3.626 r_rigid_bond_restr 2.079 r_angle_refined_deg 1.431 r_angle_other_deg 0.629 r_chiral_restr 0.058 r_bond_refined_d 0.012 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 74 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms
Software Software Software Name Purpose XDS data reduction XSCALE data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction