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Crystal Structure of WHSC1L1 in Complex with Inhibitor PEP21
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 0.1 M Bis-Tris pH 6.5, 20% w/v PEG5000MME
Crystal Properties Matthews coefficient Solvent content 2.34 47.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.87 α = 90 b = 62.66 β = 107.92 c = 48.6 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD RAYONIX MX-300 2016-02-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 46.29 93.8 20.48 3.72 29790
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.61 1.69
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.61 46.29 28299 1491 93.76 0.1807 0.1789 0.189 0.2151 0.2225 RANDOM 25.933
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.99 0.09 0.16 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.38 r_dihedral_angle_4_deg 16.798 r_dihedral_angle_3_deg 14.623 r_dihedral_angle_1_deg 6.241 r_angle_other_deg 1.766 r_angle_refined_deg 1.644 r_chiral_restr 0.091 r_bond_other_d 0.02 r_bond_refined_d 0.01 r_gen_planes_refined 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.38 r_dihedral_angle_4_deg 16.798 r_dihedral_angle_3_deg 14.623 r_dihedral_angle_1_deg 6.241 r_angle_other_deg 1.766 r_angle_refined_deg 1.644 r_chiral_restr 0.091 r_bond_other_d 0.02 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_gen_planes_other 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1835 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 31
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction