☰ Navigation Tabs
NMR structure of the Rous sarcoma virus matrix protein (M domain)
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-15N HSQC .5 mM [U-95% 15N] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 M TCEP 95% H2O/5% D2O 0.1 M 6.0 1 atm 305 Bruker AVANCE II 700 2 3D HNCA 0.5 mM [U-95% 13C; U-95% 15N] RSV MA, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP 95% H2O/5% D2O 0.1 M 6.0 1 atm 305 Bruker AVANCE II 700 3 3D HN(CO)CA 0.5 mM [U-95% 13C; U-95% 15N] RSV MA, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP 95% H2O/5% D2O 0.1 M 6.0 1 atm 305 Bruker AVANCE II 700 4 3D HNCACB 0.5 mM [U-95% 13C; U-95% 15N] RSV MA, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP 95% H2O/5% D2O 0.1 M 6.0 1 atm 305 Bruker AVANCE II 700 5 3D CBCA(CO)NH 0.5 mM [U-95% 13C; U-95% 15N] RSV MA, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP 95% H2O/5% D2O 0.1 M 6.0 1 atm 305 Bruker AVANCE II 700 6 3D HCCH-TOCSY 0.5 mM [U-95% 13C] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP 100% D2O 0.1 M 6.0 1 atm 305 Bruker AVANCE II 700 7 2D 1H-13C HSQC 0.5 mM [U-95% 13C] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 mM TCEP 100% D2O 0.1 M 6.0 1 atm 305 Bruker AVANCE II 700 8 3D 1H-15N TOCSY-HSQC .5 mM [U-95% 15N] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 M TCEP 95% H2O/5% D2O 0.1 M 6.0 1 atm 305 Bruker AVANCE II 700 9 3D 1H-15N NOESY-HSQC .5 mM [U-95% 15N] Matrix protein, 50 mM sodium phosphate, 50 mM sodium chloride, 2 M TCEP 95% H2O/5% D2O 0.1 M 6.0 1 atm 305 Bruker AVANCE II 700
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE II 700
NMR Refinement Method Details Software torsion angle dynamics CYANA
NMR Ensemble Information Conformer Selection Criteria target function Conformers Calculated Total Number 80 Conformers Submitted Total Number 20 Representative Model 1 (target function)
Computation: NMR Software # Classification Version Software Name Author 3 processing NMRPipe Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax 4 chemical shift assignment Analysis CCPN 2 structure calculation UNIO Herrmann, T. et al. 1 refinement CYANA Guntert, Mumenthaler and Wuthrich