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Crystal structure of an ACO/RPE65 chimera
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4OU9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 281 0.1 M Bis-Tris propane, pH 6 and 21% w/v sodium polyacrylate 2100
Crystal Properties Matthews coefficient Solvent content 3.52 65.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.346 α = 90 b = 125.663 β = 90 c = 204.412 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS-II BEAMLINE 17-ID-2 0.979357 NSLS-II 17-ID-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 99.8 0.196 9.5 8.7 106564
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.65 99.4 1.752
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 4OU9 2.5 48.84 101462 5100 99.82 0.18299 0.18135 0.21651 0.2002 RANDOM 60.379
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.72 -2.05 1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.002 r_dihedral_angle_4_deg 14.891 r_dihedral_angle_3_deg 14.368 r_long_range_B_refined 9.618 r_long_range_B_other 9.616 r_scangle_other 7.555 r_dihedral_angle_1_deg 6.543 r_mcangle_other 6.201 r_mcangle_it 6.2 r_scbond_it 5.056
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.002 r_dihedral_angle_4_deg 14.891 r_dihedral_angle_3_deg 14.368 r_long_range_B_refined 9.618 r_long_range_B_other 9.616 r_scangle_other 7.555 r_dihedral_angle_1_deg 6.543 r_mcangle_other 6.201 r_mcangle_it 6.2 r_scbond_it 5.056 r_scbond_other 5.056 r_mcbond_it 4.333 r_mcbond_other 4.33 r_angle_other_deg 3.742 r_angle_refined_deg 1.531 r_chiral_restr 0.091 r_bond_refined_d 0.012 r_gen_planes_other 0.008 r_gen_planes_refined 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15082 Nucleic Acid Atoms Solvent Atoms 725 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling REFMAC phasing