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Cross-alpha Amyloid-like Structure alphaAmG - low resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 40% MDP, 0.2 M K/Na tartrate
Crystal Properties Matthews coefficient Solvent content 6.27 80.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 172.279 α = 90 b = 172.279 β = 90 c = 153.758 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2017-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.03320 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.3 172 99.7 15 16.8 38224
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.3 3.42
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.3 149.2 19794 1042 99.74 0.25081 0.24953 0.246 0.27669 0.2701 RANDOM 89.195
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.59 -2.29 -4.59 14.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.447 r_dihedral_angle_3_deg 15.446 r_dihedral_angle_4_deg 14.79 r_dihedral_angle_1_deg 3.92 r_long_range_B_refined 2.225 r_long_range_B_other 2.225 r_angle_refined_deg 0.868 r_mcangle_it 0.785 r_mcangle_other 0.785 r_angle_other_deg 0.756
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 45.447 r_dihedral_angle_3_deg 15.446 r_dihedral_angle_4_deg 14.79 r_dihedral_angle_1_deg 3.92 r_long_range_B_refined 2.225 r_long_range_B_other 2.225 r_angle_refined_deg 0.868 r_mcangle_it 0.785 r_mcangle_other 0.785 r_angle_other_deg 0.756 r_scangle_other 0.703 r_mcbond_other 0.44 r_mcbond_it 0.439 r_scbond_it 0.376 r_scbond_other 0.376 r_chiral_restr 0.034 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3562 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing