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Cross-alpha Amyloid-like Structure alphaAmmem
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 298 35% MPD, 0.2 M MgCl2 and imidazole 0.1 M pH 8
Crystal Properties Matthews coefficient Solvent content 3.41 63.96
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.676 α = 90 b = 82.676 β = 90 c = 155.009 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-03-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.11584 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.55 72 97.9 6.4 4.1 7070
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.55 3.77
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3.55 71.6 3944 206 99.23 0.30948 0.30746 0.3038 0.34514 0.3353 RANDOM 96.592
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.26 1.63 3.26 -10.56
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.237 r_dihedral_angle_3_deg 20.475 r_long_range_B_refined 18.045 r_long_range_B_other 18.043 r_scangle_other 10.356 r_mcangle_it 9.983 r_mcangle_other 9.978 r_mcbond_it 6.006 r_mcbond_other 6.001 r_scbond_it 5.926
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.237 r_dihedral_angle_3_deg 20.475 r_long_range_B_refined 18.045 r_long_range_B_other 18.043 r_scangle_other 10.356 r_mcangle_it 9.983 r_mcangle_other 9.978 r_mcbond_it 6.006 r_mcbond_other 6.001 r_scbond_it 5.926 r_scbond_other 5.921 r_dihedral_angle_1_deg 5.554 r_angle_refined_deg 1.368 r_angle_other_deg 0.992 r_chiral_restr 0.068 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1323 Nucleic Acid Atoms Solvent Atoms 3 Heterogen Atoms 9
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing