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Transcriptional repressor, CouR, bound to p-coumaroyl-CoA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 292 0.17 M lithium sulfate, 23.5% PEG 4K, 1 mM DTT, 0.085 M Tris-HCl pH 8.5, 15% glycerol
Crystal Properties Matthews coefficient Solvent content 2.26 45.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.854 α = 90 b = 104.006 β = 90 c = 128.801 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2014-04-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 21-ID-G 0.97857 APS 21-ID-G
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 128.801 99 0.056 0.061 0.024 1 20.5 6.6 43271
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.126 98.5 0.95 1.029 0.392 0.8 2.2 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.09 80.92 41175 2095 99.03 0.21173 0.20897 0.26406 0.2568 RANDOM 48.386
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.18 -0.47 -2.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.067 r_dihedral_angle_4_deg 23.412 r_dihedral_angle_3_deg 18.995 r_long_range_B_refined 10.045 r_long_range_B_other 10.032 r_scangle_other 8.089 r_dihedral_angle_1_deg 6.813 r_mcangle_it 6.041 r_mcangle_other 6.04 r_scbond_it 5.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.067 r_dihedral_angle_4_deg 23.412 r_dihedral_angle_3_deg 18.995 r_long_range_B_refined 10.045 r_long_range_B_other 10.032 r_scangle_other 8.089 r_dihedral_angle_1_deg 6.813 r_mcangle_it 6.041 r_mcangle_other 6.04 r_scbond_it 5.43 r_scbond_other 5.429 r_mcbond_it 4.187 r_mcbond_other 4.179 r_angle_refined_deg 2.12 r_angle_other_deg 1.161 r_chiral_restr 0.129 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4232 Nucleic Acid Atoms Solvent Atoms 235 Heterogen Atoms 236
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing