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FGFR1 kinase complex with inhibitor SN37118
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WUN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 20% MPEG 5000, 0.1 M sodium cacodylate pH 7.5, 0.2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.48 50.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 213.514 α = 90 b = 52.193 β = 107.03 c = 65.795 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210r 2014-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON AUSTRALIAN SYNCHROTRON BEAMLINE MX1 0.95370 Australian Synchrotron MX1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 19.45 98.6 0.066 0.027 1 18.9 7.6 46401
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 96 0.453 0.774 1.9 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4WUN 2 19.45 44149 2250 98.33 0.22213 0.22045 0.25504 0.2217 RANDOM 45.888
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.31 0.97 -1.28 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.607 r_dihedral_angle_4_deg 17.754 r_dihedral_angle_3_deg 14.643 r_dihedral_angle_1_deg 6.449 r_long_range_B_refined 4.858 r_long_range_B_other 4.854 r_scangle_other 2.926 r_mcangle_it 2.465 r_mcangle_other 2.465 r_scbond_it 1.898
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.607 r_dihedral_angle_4_deg 17.754 r_dihedral_angle_3_deg 14.643 r_dihedral_angle_1_deg 6.449 r_long_range_B_refined 4.858 r_long_range_B_other 4.854 r_scangle_other 2.926 r_mcangle_it 2.465 r_mcangle_other 2.465 r_scbond_it 1.898 r_scbond_other 1.897 r_angle_refined_deg 1.655 r_mcbond_it 1.565 r_mcbond_other 1.564 r_angle_other_deg 0.908 r_chiral_restr 0.124 r_bond_refined_d 0.012 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4015 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing