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FGFR1 kinase complex with inhibitor SN36985
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4WUN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 20% MPEG 5000, 0.1 M sodium cacodylate pH 7.5, 0.2 M ammonium sulfate
Crystal Properties Matthews coefficient Solvent content 2.24 45.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 208.426 α = 90 b = 49.013 β = 105.97 c = 64.628 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 IMAGE PLATE MAR scanner 345 mm plate osmic 2015-01-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 19.71 99.9 0.08 0.034 0.999 19.9 7.4 21315
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.12 2.18 100 0.682 0.293 0.854 3.1 7.2 2944
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4WUN 2.12 19.71 34238 1742 99.83 0.20704 0.20545 0.2127 0.23852 0.2429 RANDOM 34.98
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.28 0.31 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.989 r_dihedral_angle_4_deg 16.704 r_dihedral_angle_3_deg 13.636 r_dihedral_angle_1_deg 6.217 r_long_range_B_refined 4.099 r_long_range_B_other 4.088 r_scangle_other 2.467 r_mcangle_it 2.156 r_mcangle_other 2.156 r_angle_refined_deg 1.588
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.989 r_dihedral_angle_4_deg 16.704 r_dihedral_angle_3_deg 13.636 r_dihedral_angle_1_deg 6.217 r_long_range_B_refined 4.099 r_long_range_B_other 4.088 r_scangle_other 2.467 r_mcangle_it 2.156 r_mcangle_other 2.156 r_angle_refined_deg 1.588 r_scbond_it 1.547 r_scbond_other 1.53 r_mcbond_it 1.295 r_mcbond_other 1.295 r_angle_other_deg 0.853 r_chiral_restr 0.113 r_bond_refined_d 0.011 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4132 Nucleic Acid Atoms Solvent Atoms 88 Heterogen Atoms 78
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing