6BZE
Cryo-EM structure of BCL10 CARD filament
ELECTRON MICROSCOPY
Starting Model(s)
Initial Refinement Model(s) | |||
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Type | Source | Accession Code | Details |
experimental model | PDB | 2MB9 |
Sample |
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BCL10 CARD |
Specimen Preparation | |
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Sample Aggregation State | FILAMENT |
Vitrification Instrument | FEI VITROBOT MARK III |
Cryogen Name | ETHANE |
Sample Vitrification Details | 5 second blotting time with force 3 |
3D Reconstruction | |
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Reconstruction Method | HELICAL |
Number of Particles | 39992 |
Reported Resolution (Å) | 4 |
Resolution Method | FSC 0.143 CUT-OFF |
Other Details | |
Refinement Type | |
Symmetry Type | HELICAL |
Axial Symmetry | C1 |
Axial Rise | 5 |
Angular Rotation | -100.8 |
Map-Model Fitting and Refinement | |||||
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Id | 1 (2MB9) | ||||
Refinement Space | |||||
Refinement Protocol | RIGID BODY FIT | ||||
Refinement Target | |||||
Overall B Value | |||||
Fitting Procedure | |||||
Details |
Data Acquisition | |||||||||
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Detector Type | DIRECT ELECTRON DE-16 (4k x 4k) | ||||||||
Electron Dose (electrons/Å**2) | 40 |
Imaging Experiment | 1 |
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Date of Experiment | |
Temperature (Kelvin) | |
Microscope Model | FEI TECNAI ARCTICA |
Minimum Defocus (nm) | 1000 |
Maximum Defocus (nm) | 6000 |
Minimum Tilt Angle (degrees) | |
Maximum Tilt Angle (degrees) | |
Nominal CS | 2.7 |
Imaging Mode | BRIGHT FIELD |
Specimen Holder Model | |
Nominal Magnification | |
Calibrated Magnification | |
Source | FIELD EMISSION GUN |
Acceleration Voltage (kV) | 200 |
Imaging Details |
EM Software | ||
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Task | Software Package | Version |
PARTICLE SELECTION | EMAN2 | |
IMAGE ACQUISITION | Leginon | |
CTF CORRECTION | RELION | |
MODEL FITTING | PHENIX | |
MODEL REFINEMENT | PHENIX | |
INITIAL EULER ASSIGNMENT | IHRSR | |
CLASSIFICATION | RELION | |
RECONSTRUCTION | PHENIX |
Image Processing | ||||
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CTF Correction Type | CTF Correction Details | Number of Particles Selected | Particle Selection Details | |
PHASE FLIPPING AND AMPLITUDE CORRECTION | 103873 |