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The crystal structure of fluoride channel Fluc Ec2 with Monobody S12
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5KBN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 295 50 mM ADA-NaOH, 50 mM LiNO3, 34% PEG 400
Crystal Properties Matthews coefficient Solvent content 5.33 76.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.441 α = 90 b = 105.441 β = 90 c = 183.015 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD ADSC QUANTUM 315r 2015-06-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.999 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 91.53 100 0.162 0.165 0.031 1 21.1 28.1 21435
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.18 100 1.983 2.018 0.372 0.842 29.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5kbn 3 91.53 20295 1077 99.91 0.2247 0.2233 0.229 0.2494 0.256 RANDOM 85.372
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.96 1.96 -3.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.377 r_dihedral_angle_4_deg 24.306 r_dihedral_angle_3_deg 16.799 r_dihedral_angle_1_deg 6.659 r_angle_refined_deg 2.069 r_angle_other_deg 1.116 r_chiral_restr 0.121 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.377 r_dihedral_angle_4_deg 24.306 r_dihedral_angle_3_deg 16.799 r_dihedral_angle_1_deg 6.659 r_angle_refined_deg 2.069 r_angle_other_deg 1.116 r_chiral_restr 0.121 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3361 Nucleic Acid Atoms Solvent Atoms 20 Heterogen Atoms 5
Software Software Software Name Purpose XDS data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction