☰ Navigation Tabs
Crystal structure of the A/Hong Kong/1/1968 (H3N2) influenza virus hemagglutinin E190D mutant apo form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4FNK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1 M sodium cacodylate pH 6.5, 6% PEG 8000, and 39% 2-methyl-2,4-pentanediol
Crystal Properties Matthews coefficient Solvent content 2.94 58.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 209.273 α = 90 b = 131.447 β = 97.88 c = 71.921 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.0332 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99.4 0.1 0.05 1 16.3 4.5 96961
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 97.2 0.71 0.44 0.71 1.2 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4FNK 2.2 50 92139 4791 99.05 0.18247 0.1811 0.186 0.20934 0.2142 RANDOM 49.69
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.73 1.66 -1.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.566 r_dihedral_angle_4_deg 17.021 r_dihedral_angle_3_deg 14.381 r_dihedral_angle_1_deg 6.039 r_long_range_B_refined 5.344 r_long_range_B_other 5.264 r_scangle_other 2.782 r_mcangle_it 1.658 r_mcangle_other 1.658 r_scbond_it 1.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.566 r_dihedral_angle_4_deg 17.021 r_dihedral_angle_3_deg 14.381 r_dihedral_angle_1_deg 6.039 r_long_range_B_refined 5.344 r_long_range_B_other 5.264 r_scangle_other 2.782 r_mcangle_it 1.658 r_mcangle_other 1.658 r_scbond_it 1.61 r_scbond_other 1.608 r_angle_refined_deg 1.461 r_mcbond_it 0.987 r_mcbond_other 0.987 r_angle_other_deg 0.94 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11517 Nucleic Acid Atoms Solvent Atoms 698 Heterogen Atoms 329
Software Software Software Name Purpose REFMAC refinement HKL-2000 data processing HKL-2000 data scaling PHASER phasing