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Shewanella frigidimarina ice-binding protein_1 DUF3494 Domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model PHYRE Phyre2 Model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 277.15 2.4 M Ammonium Sulfate, 0.1 M citric acid (pH 5)
Crystal Properties Matthews coefficient Solvent content 2.5 50.88
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.288 α = 90 b = 80.278 β = 105.519 c = 72.736 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 101.2 CCD RAYONIX MX300HE 2016-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08B1-1 0.980 CLSI 08B1-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.597 42.67334 99.14 0.1775 0.993 5.94 3.8 64562 8.72197289856
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE Phyre2 Model 1.59712947109 42.6733383803 1.34762305288 64471 2010 99.1388722302 0.185402565195 0.184375182423 0.1845 0.216840600662 0.2175 11.6712645205
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 6.61196295486 f_angle_d 0.834523130742 f_chiral_restr 0.0562346199529 f_bond_d 0.00531864885199 f_plane_restr 0.00502863734331
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3497 Nucleic Acid Atoms Solvent Atoms 776 Heterogen Atoms 51
Software Software Software Name Purpose PHENIX refinement XDS data reduction Aimless data scaling PHENIX phasing