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2.2A Crystal Structure of Co-CAO1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5U8Y
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 281 50mM HEPES pH 6.5, 39% sodium polyacrylate
Crystal Properties Matthews coefficient Solvent content 2.76 55.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.695 α = 90 b = 100.695 β = 90 c = 448.38 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2017-07-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 24-ID-E 0.979180 APS 24-ID-E
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 98 0.079 10.43 3.4 133339
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 96.1 1.089 20826
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 5U8Y 2.2 49.12 127272 6067 98.04 0.18002 0.17878 0.1861 0.20529 0.2117 RANDOM 52.503
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 0.37 0.74 -2.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.081 r_dihedral_angle_4_deg 14.232 r_dihedral_angle_3_deg 13.29 r_long_range_B_refined 7.375 r_long_range_B_other 7.353 r_dihedral_angle_1_deg 6.692 r_scangle_other 4.962 r_mcangle_it 4.026 r_mcangle_other 4.026 r_scbond_it 3.144
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.081 r_dihedral_angle_4_deg 14.232 r_dihedral_angle_3_deg 13.29 r_long_range_B_refined 7.375 r_long_range_B_other 7.353 r_dihedral_angle_1_deg 6.692 r_scangle_other 4.962 r_mcangle_it 4.026 r_mcangle_other 4.026 r_scbond_it 3.144 r_scbond_other 3.144 r_mcbond_it 2.713 r_mcbond_other 2.713 r_angle_refined_deg 1.359 r_angle_other_deg 0.916 r_chiral_restr 0.081 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15924 Nucleic Acid Atoms Solvent Atoms 955 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling REFMAC phasing