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Crystal structure of Legionella effector protein sdeA (lpg2157) aa. 211-910
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 298 PEG 8,000 9%, 0.1M Hepes pH7.6
Crystal Properties Matthews coefficient Solvent content 2.83 56.58
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.806 α = 90 b = 80.616 β = 109.87 c = 85.612 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-05-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 0.9789 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 80.51 99.3 7.98 3.278 18728
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 80.51 41829 2111 96.55 0.19731 0.19504 0.2068 0.24078 0.2442 RANDOM 49.494
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.19 0.63 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.248 r_dihedral_angle_4_deg 17.047 r_dihedral_angle_3_deg 16.75 r_long_range_B_refined 7.58 r_long_range_B_other 7.546 r_dihedral_angle_1_deg 6.605 r_scangle_other 4.287 r_mcangle_it 3.938 r_mcangle_other 3.937 r_scbond_it 2.632
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.248 r_dihedral_angle_4_deg 17.047 r_dihedral_angle_3_deg 16.75 r_long_range_B_refined 7.58 r_long_range_B_other 7.546 r_dihedral_angle_1_deg 6.605 r_scangle_other 4.287 r_mcangle_it 3.938 r_mcangle_other 3.937 r_scbond_it 2.632 r_scbond_other 2.632 r_mcbond_it 2.466 r_mcbond_other 2.464 r_angle_refined_deg 1.813 r_angle_other_deg 0.871 r_chiral_restr 0.1 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5338 Nucleic Acid Atoms Solvent Atoms 170 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling SHELXD phasing