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Structure of profilin Art v4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5EM0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.9 298 0.49 M Sodium phosphate monobasic monohydrate
Crystal Properties Matthews coefficient Solvent content 1.74 29.21
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 32.675 α = 90 b = 32.675 β = 90 c = 81.782 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2017-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 40 95.5 0.055 0.055 0.065 0.04 27.99 2.3 7348 3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 97.7 0.327 0.327 0.368 0.233 3.52 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5em0 1.9 28.3 6957 390 95.85 0.16976 0.16699 0.1796 0.21411 0.2182 RANDOM 42.48
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.67 r_dihedral_angle_4_deg 15.636 r_dihedral_angle_3_deg 13.386 r_dihedral_angle_1_deg 5.685 r_angle_other_deg 3.866 r_long_range_B_refined 3.864 r_long_range_B_other 3.856 r_scangle_other 2.451 r_mcangle_it 2.004 r_mcangle_other 2.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.67 r_dihedral_angle_4_deg 15.636 r_dihedral_angle_3_deg 13.386 r_dihedral_angle_1_deg 5.685 r_angle_other_deg 3.866 r_long_range_B_refined 3.864 r_long_range_B_other 3.856 r_scangle_other 2.451 r_mcangle_it 2.004 r_mcangle_other 2.004 r_angle_refined_deg 1.703 r_scbond_it 1.582 r_scbond_other 1.582 r_mcbond_it 1.239 r_mcbond_other 1.231 r_chiral_restr 0.081 r_bond_refined_d 0.014 r_gen_planes_other 0.01 r_gen_planes_refined 0.007 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1007 Nucleic Acid Atoms Solvent Atoms 27 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data scaling MOLREP phasing