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Structure of RORgt in complex with a novel inverse agonist 1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 1.6M Sodium Formate, 3% MPD, and 100 mM HEPES (pH 7.5)
Crystal Properties Matthews coefficient Solvent content 3.59 65.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.217 α = 90 b = 97.217 β = 90 c = 131.561 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2012-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 0.98 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.69 50 99.3 0.078 11 6.9 19499
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.69 2.74 99.7 0.859 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.69 50 18452 991 99.08 0.1914 0.1891 0.1914 0.2344 0.2281 RANDOM 76.11
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.74 0.37 0.74 -2.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.579 r_dihedral_angle_4_deg 17.466 r_dihedral_angle_3_deg 17.152 r_dihedral_angle_1_deg 4.967 r_angle_refined_deg 1.278 r_angle_other_deg 0.902 r_chiral_restr 0.065 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.579 r_dihedral_angle_4_deg 17.466 r_dihedral_angle_3_deg 17.152 r_dihedral_angle_1_deg 4.967 r_angle_refined_deg 1.278 r_angle_other_deg 0.902 r_chiral_restr 0.065 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3475 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 64
Software Software Software Name Purpose HKL-2000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction PHASER model building