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E45A/R132T mutant of HIV-1 capsid protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 PEG3350, NaI, Sodium cacodylate, Glycerol
Crystal Properties Matthews coefficient Solvent content 2.79 55.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.431 α = 90 b = 92.431 β = 90 c = 57.702 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-D 1.033190 APS 23-ID-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47 99.9 0.054 0.057 0.018 1 23.3 9.8 19130
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 99.3 0.992 1.071 0.395 0.589 7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2 47 18210 918 99.94 0.1984 0.1973 0.2018 0.2183 0.2207 RANDOM 58.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.09 -0.19 0.6
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 37.517 r_dihedral_angle_2_deg 32.648 r_sphericity_free 25.721 r_dihedral_angle_4_deg 16.952 r_dihedral_angle_3_deg 11.494 r_dihedral_angle_1_deg 5.267 r_angle_refined_deg 1.106 r_angle_other_deg 0.862 r_chiral_restr 0.059 r_bond_refined_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 37.517 r_dihedral_angle_2_deg 32.648 r_sphericity_free 25.721 r_dihedral_angle_4_deg 16.952 r_dihedral_angle_3_deg 11.494 r_dihedral_angle_1_deg 5.267 r_angle_refined_deg 1.106 r_angle_other_deg 0.862 r_chiral_restr 0.059 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1679 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 15
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction Aimless data reduction CRANK2 phasing