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E45A mutant of HIV-1 capsid protein (other crystal form)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 291 PEG3350, NaI, MIB, Glycerol
Crystal Properties Matthews coefficient Solvent content 2.79 55.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.493 α = 90 b = 92.493 β = 90 c = 57.748 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD 2016-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 23-ID-B 1.033200 APS 23-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.21 47 99.9 0.084 0.089 0.027 0.999 17.6 11.3 14252
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.21 2.28 99.2 1.32 1.385 0.417 0.628 10.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.21 47 13556 693 99.95 0.2033 0.2023 0.2086 0.2233 0.2279 RANDOM 63.319
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.58 -0.29 -0.58 1.88
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 53.232 r_sphericity_free 51.767 r_dihedral_angle_2_deg 32.923 r_dihedral_angle_4_deg 18.231 r_dihedral_angle_3_deg 11.687 r_dihedral_angle_1_deg 5.282 r_angle_refined_deg 1.062 r_angle_other_deg 0.851 r_chiral_restr 0.054 r_bond_refined_d 0.007
RMS Deviations Key Refinement Restraint Deviation r_sphericity_bonded 53.232 r_sphericity_free 51.767 r_dihedral_angle_2_deg 32.923 r_dihedral_angle_4_deg 18.231 r_dihedral_angle_3_deg 11.687 r_dihedral_angle_1_deg 5.282 r_angle_refined_deg 1.062 r_angle_other_deg 0.851 r_chiral_restr 0.054 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1721 Nucleic Acid Atoms Solvent Atoms 98 Heterogen Atoms 14
Software Software Software Name Purpose Aimless data scaling REFMAC refinement PDB_EXTRACT data extraction Aimless data reduction CRANK2 phasing