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Crystal structure of fluoride channel Fluc Ec2 F83M Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5KBN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 295 30% PEG 550mme, 100 mM ADA, 10 mM HEPES, 100 mM NaF, 50 mM LiNO3
Crystal Properties Matthews coefficient Solvent content 5.59 78.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.986 α = 90 b = 86.986 β = 90 c = 141.43 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2017-05-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.99988 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 47.14 99.9 0.103 0.107 0.03 1 15 12.9 32347
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.6 2.72 99.9 1.907 1.984 0.546 0.662 13.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5KBN 2.6 47.14 30718 1587 99.91 0.2222 0.2207 0.2229 0.25 0.2508 RANDOM 82.65
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.64 -3.64 7.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.764 r_dihedral_angle_4_deg 13.596 r_dihedral_angle_3_deg 12.978 r_dihedral_angle_1_deg 6.352 r_angle_refined_deg 1.134 r_angle_other_deg 0.833 r_chiral_restr 0.06 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.764 r_dihedral_angle_4_deg 13.596 r_dihedral_angle_3_deg 12.978 r_dihedral_angle_1_deg 6.352 r_angle_refined_deg 1.134 r_angle_other_deg 0.833 r_chiral_restr 0.06 r_bond_refined_d 0.007 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3359 Nucleic Acid Atoms Solvent Atoms 15 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PDB_EXTRACT data extraction XDS data reduction PHASER phasing