☰ Navigation Tabs
Mitochondrial ATPase Protease YME1
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 7.19 f_angle_d 0.973 f_chiral_restr 0.055 f_bond_d 0.01 f_plane_restr 0.006
Sample YME1 ATPase Protease Walker B mutant bound to substrate
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument FEI VITROBOT MARK IV Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 62917 Reported Resolution (Å) 3.4 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT Point Symmetry C1
Map-Model Fitting and Refinement Id 1 Refinement Space REAL Refinement Protocol AB INITIO MODEL Refinement Target Overall B Value 100 Fitting Procedure Details
Data Acquisition Detector Type GATAN K2 SUMMIT (4k x 4k) Electron Dose (electrons/Å**2) 60
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TITAN KRIOS Minimum Defocus (nm) 1200 Maximum Defocus (nm) 2500 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS 2.7 Imaging Mode BRIGHT FIELD Specimen Holder Model FEI TITAN KRIOS AUTOGRID HOLDER Nominal Magnification 29000 Calibrated Magnification 51500 Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details Data collected using Leginon
EM Software Task Software Package Version PARTICLE SELECTION FindEM IMAGE ACQUISITION Leginon 3.2 CTF CORRECTION RELION 1.4 INITIAL EULER ASSIGNMENT RELION 1.4 FINAL EULER ASSIGNMENT RELION 1.4 RECONSTRUCTION RELION 1.4 MODEL REFINEMENT Rosetta 3.5 MODEL REFINEMENT PHENIX 1.9
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING ONLY 2285499 Particles picked automatically with FindEM template picking