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Segment from bank vole prion protein 168-176 QYNNQNNFV
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 6 298 10% MPD, 0.1 M MES, pH 6.0
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 4.94 α = 94.21 b = 10.34 β = 92.38 c = 31.15 γ = 102.2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 electron 100 M SINGLE WAVELENGTH
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.75 10.338 97.1 0.232 0.25 0.982 4.57 5.787 7474 -3 4.17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 0.75 0.77 96.2 0.638 0.729 0.209 1.77 4.434
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B ELECTRON CRYSTALLOGRAPHY AB INITIO PHASING FREE R-VALUE 0.75 10.338 1.95 7473 673 96.96 0.2426 0.2422 0.246 0 6.0686
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.838 f_angle_d 1.014 f_chiral_restr 0.104 f_bond_d 0.014 f_plane_restr 0.005
Software Software Software Name Purpose PHENIX refinement XSCALE data scaling PDB_EXTRACT data extraction
Sample bank vole prion 168-176
Specimen Preparation Sample Aggregation State 3D ARRAY Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method CRYSTALLOGRAPHY Number of Particles Reported Resolution (Å) Resolution Method DIFFRACTION PATTERN/LAYERLINES Other Details Refinement Type Symmetry Type 3D CRYSTAL Space Group Name Length a 4.94 Length b 10.34 Length c 10.34 Angle Alpha 102.2 Angle Beta 92.38 Angle Gamma 102.2
Map-Model Fitting and Refinement Id 1 Refinement Space RECIPROCAL Refinement Protocol AB INITIO MODEL Refinement Target maximum likelihood Overall B Value 6.068 Fitting Procedure Details
Data Acquisition Detector Type TVIPS TEMCAM-F416 (4k x 4k) Electron Dose (electrons/Å**2) 0.025
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model FEI TECNAI F20 Minimum Defocus (nm) Maximum Defocus (nm) Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode DIFFRACTION Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 200 Imaging Details
EM Software Task Software Package Version MODEL REFINEMENT Coot
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details NONE