6AWR

Structure of PR 10 Allergen Ara h 8.01 in complex with ANS


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4MAP 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8.5295100 mM Tris, pH 8.5, 200 mM lithium sulfate, 32% PEG 4000
Crystal Properties
Matthews coefficientSolvent content
2.2545.23

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 41.041α = 90
b = 87.291β = 96.69
c = 42.85γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 210r2013-11-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 19-BM1APS19-BM

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Rrim I (All)Rpim I (All)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.65098.90.030.030.040.01937439114-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Rrim I (All)Rpim I (All)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6399.10.3730.3730.5290.262.33.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4MAP1.643.6537118195798.830.169270.167220.2077RANDOM28.155
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.44-1.03-0.940.72
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.363
r_dihedral_angle_4_deg18.184
r_dihedral_angle_3_deg10.732
r_long_range_B_refined6.064
r_dihedral_angle_1_deg6.005
r_long_range_B_other5.856
r_scangle_other2.765
r_mcangle_it2.015
r_mcangle_other2.015
r_angle_refined_deg1.791
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.363
r_dihedral_angle_4_deg18.184
r_dihedral_angle_3_deg10.732
r_long_range_B_refined6.064
r_dihedral_angle_1_deg6.005
r_long_range_B_other5.856
r_scangle_other2.765
r_mcangle_it2.015
r_mcangle_other2.015
r_angle_refined_deg1.791
r_scbond_it1.733
r_scbond_other1.704
r_mcbond_it1.201
r_mcbond_other1.199
r_angle_other_deg1.026
r_chiral_restr0.111
r_bond_refined_d0.015
r_gen_planes_other0.014
r_gen_planes_refined0.011
r_bond_other_d0.007
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2364
Nucleic Acid Atoms
Solvent Atoms394
Heterogen Atoms55

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data scaling
MOLREPphasing
HKL-3000phasing