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Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.5 298 100 mM Na Acetate pH 4.5, 200 mM Li2SO4, 50% PEG400
Crystal Properties Matthews coefficient Solvent content 2.02 39.09
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 21.502 α = 90 b = 26.209 β = 99.2 c = 31.102 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944 2015-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 83.9 0.06 0.045 0.985 14.2 1.8 2751
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.8 67.9 0.092 0.092 0.944 6.2 1.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 30.7 2623 125 83.88 0.14215 0.13905 0.1533 0.20506 0.201 RANDOM 16.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 0.13 -0.34 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.792 r_dihedral_angle_3_deg 14.979 r_long_range_B_refined 8.346 r_dihedral_angle_1_deg 7.968 r_dihedral_angle_4_deg 7.528 r_long_range_B_other 7.527 r_scbond_it 4.349 r_scangle_other 3.455 r_scbond_other 2.193 r_mcangle_it 2.033
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.792 r_dihedral_angle_3_deg 14.979 r_long_range_B_refined 8.346 r_dihedral_angle_1_deg 7.968 r_dihedral_angle_4_deg 7.528 r_long_range_B_other 7.527 r_scbond_it 4.349 r_scangle_other 3.455 r_scbond_other 2.193 r_mcangle_it 2.033 r_mcangle_other 2.03 r_angle_refined_deg 1.723 r_mcbond_it 1.356 r_mcbond_other 1.27 r_angle_other_deg 0.811 r_chiral_restr 0.134 r_bond_refined_d 0.02 r_gen_planes_refined 0.013 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 289 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing