☰ Navigation Tabs
Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 1.1 M Na malonate pH 7.0, 0.1 M HEPES pH 7.0, 0.5 % Jeffamine ED-2001 pH 7.0
Crystal Properties Matthews coefficient Solvent content 1.71 28.23
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 22.539 α = 90 b = 26.312 β = 90 c = 48.04 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2016-03-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.53 50 86.9 0.095 0.023 13.1 13.1 7263
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.53 1.56 10.7 0.126 0.076 0.935 2.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.53 24.02 3857 196 87.94 0.13555 0.13348 0.1468 0.17821 0.1925 RANDOM 15.516
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.02 -0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.923 r_dihedral_angle_4_deg 22.27 r_dihedral_angle_3_deg 13.945 r_dihedral_angle_1_deg 7.501 r_long_range_B_refined 5.571 r_long_range_B_other 5.183 r_scangle_other 3.878 r_scbond_it 2.424 r_scbond_other 2.42 r_mcangle_other 1.627
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.923 r_dihedral_angle_4_deg 22.27 r_dihedral_angle_3_deg 13.945 r_dihedral_angle_1_deg 7.501 r_long_range_B_refined 5.571 r_long_range_B_other 5.183 r_scangle_other 3.878 r_scbond_it 2.424 r_scbond_other 2.42 r_mcangle_other 1.627 r_mcangle_it 1.624 r_angle_refined_deg 1.556 r_mcbond_it 1.096 r_mcbond_other 1.081 r_angle_other_deg 0.758 r_chiral_restr 0.115 r_bond_refined_d 0.016 r_gen_planes_refined 0.012 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 279 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing