☰ Navigation Tabs
Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FLE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 2.4M Na malonate pH 7.0
Crystal Properties Matthews coefficient Solvent content 2.46 50.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.333 α = 90 b = 71.333 β = 90 c = 214.444 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2016-04-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.0 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 71.33 99.2 0.072 0.028 29.91 7.2 41565
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.44 97.2 0.491 0.196 0.94 6.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FLE 2.4 71.33 39448 2051 99.08 0.19915 0.19649 0.2009 0.24825 0.253 RANDOM 44.584
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.02 -0.02 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.201 r_dihedral_angle_4_deg 15.987 r_dihedral_angle_3_deg 15.92 r_long_range_B_other 10.171 r_long_range_B_refined 10.156 r_scangle_other 8.072 r_dihedral_angle_1_deg 7.736 r_mcangle_it 7.193 r_mcangle_other 7.193 r_scbond_it 5.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.201 r_dihedral_angle_4_deg 15.987 r_dihedral_angle_3_deg 15.92 r_long_range_B_other 10.171 r_long_range_B_refined 10.156 r_scangle_other 8.072 r_dihedral_angle_1_deg 7.736 r_mcangle_it 7.193 r_mcangle_other 7.193 r_scbond_it 5.48 r_scbond_other 5.479 r_mcbond_it 5.086 r_mcbond_other 5.076 r_angle_refined_deg 1.197 r_angle_other_deg 0.707 r_chiral_restr 0.069 r_bond_refined_d 0.012 r_gen_planes_refined 0.01 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6305 Nucleic Acid Atoms Solvent Atoms 312 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing