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Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 0.1M Tris pH 8.5, 20% Ethanol
Crystal Properties Matthews coefficient Solvent content 1.78 30.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.102 α = 90 b = 21.323 β = 92.6 c = 20.368 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2016-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 89.6 0.032 0.022 0.994 14.45 2.7 2535
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.98 45 0.035 0.028 0.994 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 23.03 1370 55 87.32 0.13412 0.13207 0.145 0.17907 0.1763 RANDOM 16.29
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.07 -0.05 0.01 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 27.094 r_dihedral_angle_2_deg 26.834 r_dihedral_angle_3_deg 13.661 r_dihedral_angle_1_deg 8.273 r_long_range_B_refined 5.994 r_long_range_B_other 5.915 r_scangle_other 5.624 r_scbond_other 3.922 r_scbond_it 3.904 r_mcangle_other 1.762
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_4_deg 27.094 r_dihedral_angle_2_deg 26.834 r_dihedral_angle_3_deg 13.661 r_dihedral_angle_1_deg 8.273 r_long_range_B_refined 5.994 r_long_range_B_other 5.915 r_scangle_other 5.624 r_scbond_other 3.922 r_scbond_it 3.904 r_mcangle_other 1.762 r_mcangle_it 1.76 r_angle_refined_deg 1.279 r_mcbond_it 1.257 r_mcbond_other 1.223 r_angle_other_deg 0.925 r_chiral_restr 0.113 r_bond_refined_d 0.018 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 193 Nucleic Acid Atoms Solvent Atoms 32 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing