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Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.2 289 1.6M tri-Na Citrate
Crystal Properties Matthews coefficient Solvent content 1.84 33.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.831 α = 90 b = 50.75 β = 90 c = 27.657 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2016-08-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 50 99 51.05 3.7 6993
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.13 89.8 0.04 0.05 0.028 0.995 1.2 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.09 33.17 2509 138 86.76 0.1565 0.1524 0.159 0.23571 0.2314 RANDOM 25.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.464 r_dihedral_angle_3_deg 15.669 r_dihedral_angle_4_deg 13.358 r_long_range_B_other 8.047 r_long_range_B_refined 8.046 r_dihedral_angle_1_deg 6.778 r_scangle_other 6.37 r_mcangle_it 4.667 r_mcangle_other 4.658 r_scbond_it 4.443
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 18.464 r_dihedral_angle_3_deg 15.669 r_dihedral_angle_4_deg 13.358 r_long_range_B_other 8.047 r_long_range_B_refined 8.046 r_dihedral_angle_1_deg 6.778 r_scangle_other 6.37 r_mcangle_it 4.667 r_mcangle_other 4.658 r_scbond_it 4.443 r_scbond_other 4.407 r_mcbond_it 3.08 r_mcbond_other 3.079 r_angle_refined_deg 1.623 r_angle_other_deg 0.859 r_chiral_restr 0.09 r_bond_refined_d 0.017 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 285 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing