☰ Navigation Tabs
Exploring Cystine Dense Peptide Space to Open a Unique Molecular Toolbox
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5 298 3.15 M AmSO4, 0.1 M citric acid pH 5
Crystal Properties Matthews coefficient Solvent content 1.89 34.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 27.758 α = 90 b = 23.215 β = 94.36 c = 46.308 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU SATURN 944+ 2016-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU MICROMAX-007 HF 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.9 0.108 0.033 0.976 35.3 11.6 11190
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 0.306 0.095 0.976 12.7 11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 46.17 4080 199 71.84 0.13073 0.12879 0.1427 0.17283 0.194 RANDOM 18.059
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.02 -0.03 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.076 r_dihedral_angle_4_deg 19.319 r_dihedral_angle_3_deg 15.128 r_dihedral_angle_1_deg 8.816 r_long_range_B_refined 6.585 r_long_range_B_other 6.581 r_scangle_other 5.098 r_scbond_other 3.568 r_scbond_it 3.564 r_mcangle_other 3.268
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.076 r_dihedral_angle_4_deg 19.319 r_dihedral_angle_3_deg 15.128 r_dihedral_angle_1_deg 8.816 r_long_range_B_refined 6.585 r_long_range_B_other 6.581 r_scangle_other 5.098 r_scbond_other 3.568 r_scbond_it 3.564 r_mcangle_other 3.268 r_mcangle_it 3.262 r_mcbond_it 2.145 r_mcbond_other 2.126 r_angle_refined_deg 1.541 r_angle_other_deg 0.781 r_chiral_restr 0.112 r_bond_refined_d 0.022 r_gen_planes_refined 0.01 r_bond_other_d 0.004 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 534 Nucleic Acid Atoms Solvent Atoms 67 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing