6AOU

Crystal structure of the A/Brisbane/10/2007 (H3N2) influenza virus hemagglutinin in complex with 3'-SLNLN


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 4O5N 

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP92930.1 M bicine pH 9 and 41% 2-Methyl-2,4-pentanediol
Crystal Properties
Matthews coefficientSolvent content
3.3463.17

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 100.614α = 90
b = 100.614β = 90
c = 383.106γ = 120
Symmetry
Space GroupH 3 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100PIXELDECTRIS PILATUS 6M2017-03-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL12-20.9795SSRLBL12-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Rpim I (All)CC (Half)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.755099.90.070.0214311.17586428
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Rpim I (All)CC (Half)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.8199.90.90.30.882.29.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4O5N1.755072214364199.70.169250.168190.19028RANDOM38.38
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.540.270.54-1.76
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.569
r_dihedral_angle_4_deg15.443
r_dihedral_angle_3_deg13.107
r_long_range_B_refined6.456
r_dihedral_angle_1_deg5.899
r_long_range_B_other5.79
r_scangle_other3.036
r_scbond_it1.817
r_scbond_other1.817
r_mcangle_it1.597
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg35.569
r_dihedral_angle_4_deg15.443
r_dihedral_angle_3_deg13.107
r_long_range_B_refined6.456
r_dihedral_angle_1_deg5.899
r_long_range_B_other5.79
r_scangle_other3.036
r_scbond_it1.817
r_scbond_other1.817
r_mcangle_it1.597
r_mcangle_other1.597
r_angle_refined_deg1.54
r_mcbond_it0.976
r_mcbond_other0.976
r_angle_other_deg0.941
r_chiral_restr0.09
r_bond_refined_d0.012
r_gen_planes_refined0.006
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3867
Nucleic Acid Atoms
Solvent Atoms453
Heterogen Atoms219

Software

Software
Software NamePurpose
REFMACrefinement
HKL-2000data processing
HKL-2000data scaling
PHASERphasing